Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1777

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1776: 10144 - K01869 LARS, leuS leucyl-tRNA synthetase, at 177304 to 181065 10144 mRNA_1777: 10145 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 181688 to 183339 10145 mRNA_1778: 10146 - HMMPfam-Protein of unknown function (DUF3140)-PF11338, at 183899 to 184487 10146

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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181,300 - 0.2
181,474 - -0.7
181,615 + 0.0
181,921 - 10145 mRNA_1777 0.14 1.2
182,215 + 10145 mRNA_1777 0.32 0.6
182,824 + 10145 mRNA_1777 0.69 -0.1
182,967 + 10145 mRNA_1777 0.77 0.1
182,980 + 10145 mRNA_1777 0.78 0.8
182,998 + 10145 mRNA_1777 0.79 -1.0
183,072 - 10145 mRNA_1777 0.84 -0.4
183,082 + 10145 mRNA_1777 0.84 -1.1
183,119 - 10145 mRNA_1777 0.87 0.5
183,358 - -0.2
183,389 - 0.4
183,406 + -0.0
183,518 - 0.4
183,576 + 0.8
183,582 + -1.3
183,690 + 0.6
183,690 + -0.2
183,703 + -0.6
183,704 - 1.7
183,807 + -0.8
183,961 + 10146 mRNA_1778 0.11 0.0
183,977 + 10146 mRNA_1778 0.13 -1.3