Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1767

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1766: 10134 - K03097 CSNK2A casein kinase II subunit alpha, at 151982 to 154408 10134 mRNA_1767: 10135 - HMMPfam-F-box-like-PF12937, at 154773 to 156142 10135 mRNA_1768: 10136 - K01858 INO1, ISYNA1 myo-inositol-1-phosphate synthase, at 156346 to 158351 10136

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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153,823 + 10134 mRNA_1766 0.76 0.5
153,876 + 10134 mRNA_1766 0.78 0.5
153,942 + 10134 mRNA_1766 0.81 -1.2
154,279 - 0.2
154,316 + -0.2
154,510 + -0.0
154,553 - -0.4
154,553 - 0.4
154,553 - 1.8
154,634 + -0.6
154,640 + 0.9
154,676 - 0.0
154,984 - 10135 mRNA_1767 0.15 1.8
155,128 - 10135 mRNA_1767 0.26 -0.2
155,889 - 10135 mRNA_1767 0.81 1.5
155,896 - 10135 mRNA_1767 0.82 -0.4
155,922 + 10135 mRNA_1767 0.84 -0.0
155,995 - 10135 mRNA_1767 0.89 0.9
155,998 - 10135 mRNA_1767 0.89 0.7
156,003 + 10135 mRNA_1767 0.90 -0.1
156,026 + 0.4
156,175 + 0.7
156,185 - -0.7
156,188 + 1.1
156,221 - 0.1
156,323 - 1.7
156,342 + -0.7
156,385 - 1.6
156,471 - -1.3
156,553 - 10136 mRNA_1768 0.10 -1.7
156,564 + 10136 mRNA_1768 0.11 -0.4
156,594 - 10136 mRNA_1768 0.12 -1.9
156,611 + 10136 mRNA_1768 0.13 -0.8
156,802 + 10136 mRNA_1768 0.23 -1.6