Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1708

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1708: 10076 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 3855 to 4476 10076 mRNA_1709: 10077 - K16302 CNNM metal transporter CNNM, at 5028 to 7438 10077

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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2,923 + -0.7
3,038 - 0.2
3,062 + -0.1
3,198 - 0.3
3,200 + 0.2
3,208 + 0.9
3,333 + 0.3
3,347 - 0.3
3,348 - -0.2
3,381 + 0.5
3,459 + 0.5
3,634 - 0.2
3,791 + -0.7
3,839 - -0.3
3,866 + 1.5
3,931 - 10076 mRNA_1708 0.12 -0.6
4,055 + 10076 mRNA_1708 0.32 3.0
4,063 - 10076 mRNA_1708 0.33 1.0
4,072 - 10076 mRNA_1708 0.35 1.9
4,093 - 10076 mRNA_1708 0.38 -1.3
4,363 - 10076 mRNA_1708 0.82 1.1
4,363 - 10076 mRNA_1708 0.82 0.0
4,421 - -0.1
4,425 - -1.0
4,425 + 1.3
4,432 + 0.3
4,432 + 0.4
4,482 - -0.4
4,533 - 1.7
4,540 + -1.4
4,567 - -0.3
4,597 + -3.0
4,702 + 1.3
4,933 - -0.5
4,939 - 0.7
5,001 - 0.5
5,089 - 0.2
5,089 - -0.7
5,092 + 0.8
5,117 + 0.4
5,290 + 10077 mRNA_1709 0.11 -0.0
5,296 + 10077 mRNA_1709 0.11 -1.2
5,365 + 10077 mRNA_1709 0.14 0.1
5,371 + 10077 mRNA_1709 0.14 1.0
5,372 + 10077 mRNA_1709 0.14 -1.8
5,424 + 10077 mRNA_1709 0.16 1.2