Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1655

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1655: 10023 - HMMPfam-PQ loop repeat-PF04193,SMART-Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins.-SM00679, at 819421 to 820962 10023 mRNA_1656: 10024 - HMMPfam-Universal stress protein family-PF00582,PRINTS-Universal stress protein signature-PR01438,SUPERFAMILY--SSF52402, at 821084 to 822700 10024

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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818,515 + 0.2
818,519 + -0.9
818,550 + -1.2
818,645 - 0.7
818,812 - -0.8
818,820 + -0.1
818,824 + 1.5
819,076 - -2.5
819,090 + 0.2
819,108 + 0.9
819,232 - 1.9
819,250 + -0.0
819,253 - 1.5
819,254 - 0.9
819,263 - 1.8
819,385 + 2.5
819,397 - -0.5
819,408 - 0.8
819,419 + -0.8
819,686 - 10023 mRNA_1655 0.17 0.8
819,734 + 10023 mRNA_1655 0.20 0.8
819,866 - 10023 mRNA_1655 0.29 1.1
820,282 + 10023 mRNA_1655 0.56 0.5
820,577 - 10023 mRNA_1655 0.75 -1.0
820,706 - 10023 mRNA_1655 0.83 -0.6
820,713 + 10023 mRNA_1655 0.84 -1.5
820,718 - 10023 mRNA_1655 0.84 -0.0
820,720 - 10023 mRNA_1655 0.84 0.6
820,861 - 0.4
820,862 + 0.7
821,020 + -0.9
821,031 + -1.3
821,036 + -1.2
821,038 - -0.1
821,040 + -1.0
821,047 + -0.3
821,191 - -0.0