Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1650

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1649: 10017 - KOG2495 NADH-dehydrogenase (ubiquinone), at 804506 to 806689 10017 mRNA_1650: 10018 - KOG0254 Predicted transporter (major facilitator superfamily), at 807576 to 811155 10018 mRNA_1651: 10019 - SUPERFAMILY--SSF69047, at 811349 to 811874 10019

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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806,742 - 0.7
806,759 - 0.6
806,760 + -2.5
806,761 - -1.2
806,770 + -0.7
806,801 + 0.9
806,803 - 0.4
806,819 + -0.1
806,896 + -0.4
806,914 + -1.0
806,926 + -0.1
806,992 - -0.1
807,022 + -1.3
807,087 + -1.6
807,097 + -1.1
807,099 + 0.1
807,123 - -1.5
807,126 - -0.1
807,132 + 0.9
807,141 + -1.1
807,181 - 1.7
807,185 + -1.1
807,190 - 0.8
807,192 - -0.3
807,194 - -0.9
807,200 - -0.4
807,201 + 1.9
807,210 + -1.1
807,214 - -0.0
807,258 - -0.2
807,261 + -0.6
807,264 - -0.5
807,280 - -0.1
807,285 + 0.0
807,294 - 2.1
807,313 + 0.0
807,417 - -2.2
807,434 - 2.5
807,438 + 0.1
807,483 + -0.6
807,483 + 0.4
807,508 - 2.2
807,511 + 0.0
807,517 - -1.6
807,534 - 0.5
807,691 - -1.9
807,705 + -1.2
808,082 - 10018 mRNA_1650 0.14 0.2
808,109 - 10018 mRNA_1650 0.15 -0.5
808,530 + 10018 mRNA_1650 0.27 0.3
809,392 + 10018 mRNA_1650 0.51 -0.2
810,749 + 10018 mRNA_1650 0.89 -1.0
811,769 - 10019 mRNA_1651 0.80 -0.1
811,877 + 0.1
811,938 + -0.7
811,946 - 0.8