Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1591

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1590: 9958 - KOG0586 Serine/threonine protein kinase, at 669702 to 673169 9958 mRNA_1591: 9959 - K01835 pgm phosphoglucomutase, at 673406 to 675711 9959 mRNA_1592: 9960 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 676262 to 677615 9960

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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672,469 + 9958 mRNA_1590 0.80 0.6
672,696 - 9958 mRNA_1590 0.86 2.4
672,837 - -0.3
673,130 + 0.6
673,144 - 0.2
673,170 - 1.2
673,199 + -0.8
673,221 + -1.3
673,286 + 1.2
673,290 + -0.2
673,291 - 1.2
673,295 + 1.0
673,298 + -0.1
673,303 - 2.0
673,315 + 0.4
673,316 + -0.4
673,321 + -1.2
673,322 - 0.9
673,328 - 0.0
673,337 - 0.2
673,340 - -1.2
673,343 - 1.4
673,350 - -0.5
673,350 + 1.3
673,350 + 1.4
673,352 + -0.2
673,357 + -1.3
673,357 + -0.8
673,366 + -0.5
673,481 - -0.2
673,482 + -0.3
673,492 - -1.0
673,493 + 0.7
673,510 + -0.2
673,511 + -0.7
673,633 + 1.9
673,634 - -0.8
673,652 + 9959 mRNA_1591 0.11 -0.6
673,656 + 9959 mRNA_1591 0.11 -1.1
673,657 + 9959 mRNA_1591 0.11 1.1
674,066 + 9959 mRNA_1591 0.29 0.5
674,281 + 9959 mRNA_1591 0.38 -0.3
674,377 - 9959 mRNA_1591 0.42 -0.3
674,394 - 9959 mRNA_1591 0.43 0.5
674,529 + 9959 mRNA_1591 0.49 0.1
674,533 + 9959 mRNA_1591 0.49 0.1
674,709 + 9959 mRNA_1591 0.57 -1.1
674,964 + 9959 mRNA_1591 0.68 0.2
674,981 + 9959 mRNA_1591 0.68 -0.3
675,268 + 9959 mRNA_1591 0.81 0.0
675,678 + 0.0
675,821 - 0.3
675,829 - -0.8
675,847 - 0.0
675,901 + 0.8
675,995 + -1.2
676,002 + 1.6
676,003 - 0.4
676,016 + 0.2
676,115 - 1.2
676,116 - 1.5
676,120 - 0.1
676,135 - 0.4