Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1468

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1468: 9836 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 360687 to 364959 9836

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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359,845 - 0.8
360,024 + -0.8
360,678 + 0.6
360,724 + -0.4
361,487 - 9836 mRNA_1468 0.19 -0.8
362,116 + 9836 mRNA_1468 0.33 -1.5
362,379 - 9836 mRNA_1468 0.40 -0.8
363,476 - 9836 mRNA_1468 0.65 -0.5
364,148 - 9836 mRNA_1468 0.81 -0.5
364,157 - 9836 mRNA_1468 0.81 1.8
364,766 - 0.3
364,848 + -0.5
364,868 + 0.8
364,979 - 1.8
365,010 - -0.1
365,016 - -1.1
365,162 - -0.6
365,187 + -0.5
365,310 + -1.2
365,327 - 0.7
365,337 - -0.4
365,340 + 0.0
365,345 - -0.6
365,347 - -0.3
365,349 + 0.1
365,354 + -0.8
365,355 + -0.5
365,358 + -1.0
365,360 + -0.8
365,481 + 0.8
365,482 - 2.0
365,482 + 0.4
365,483 + 0.8
365,485 - 0.3
365,496 - -0.3
365,505 + -0.5
365,506 - -0.4
365,506 + -0.3
365,506 - 1.1
365,536 - -1.3
365,625 - 1.9
365,642 - -0.4
365,653 + 0.9
365,660 - -0.3
365,669 - 0.7
365,687 - -0.2