Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1467

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1466: 9834 - BLAST putative catalytic domain thiamin pyrophosphokinase [..., at 352655 to 354087 9834 mRNA_1467: 9835 - HMMPfam-Mannosyl oligosaccharide glucosidase-PF03200,SUPERFAMILY--SSF48208, at 354447 to 358959 9835

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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353,973 - -0.4
353,985 + 0.9
354,103 - 0.4
354,124 - -0.3
354,184 + 0.7
354,210 + -0.2
354,220 - 0.1
354,232 - -1.0
354,241 - 1.2
354,252 + -0.3
354,297 - 0.6
354,339 - -1.5
354,341 + 0.6
354,360 + 0.3
354,365 + 1.2
354,382 + -0.8
354,411 + -0.1
354,424 - 0.4
354,433 - -0.4
354,514 + -0.0
354,540 + -0.1
354,543 + 0.6
354,552 + 0.1
354,592 + 0.3
354,689 - 0.7
354,713 - 1.9
354,720 - -0.7
354,740 + 0.8
354,814 + 0.5
354,859 - 0.7
354,864 + -0.3
355,155 + 9835 mRNA_1467 0.16 0.0
355,433 + 9835 mRNA_1467 0.22 -1.5
356,458 + 9835 mRNA_1467 0.45 2.8
356,610 - 9835 mRNA_1467 0.48 -0.9
356,707 + 9835 mRNA_1467 0.50 0.1
357,503 + 9835 mRNA_1467 0.68 0.6
357,512 + 9835 mRNA_1467 0.68 1.1
357,633 - 9835 mRNA_1467 0.71 0.9
357,796 + 9835 mRNA_1467 0.74 -0.9
358,063 - 9835 mRNA_1467 0.80 1.5
358,096 + 9835 mRNA_1467 0.81 0.3
358,178 + 9835 mRNA_1467 0.83 0.2
358,816 + 0.7
358,964 + 1.1
359,128 - 0.5
359,131 + 0.4
359,845 - 0.8