Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1452

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1451: 9819 - K11987 PTGS2, COX2 prostaglandin-endoperoxide synthase 2, at 321832 to 325764 9819 mRNA_1452: 9820 - K07241 nixA high-affinity nickel-transport protein, at 326244 to 328401 9820 mRNA_1453: 9821 - HMMPfam-G-patch domain-PF01585,ProSiteProfiles-G-patch domain profile.-PS50174,SMART-glycine rich nucleic binding domain-SM00443, at 328591 to 330027 9821

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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325,261 - 9819 mRNA_1451 0.87 1.2
325,279 + 9819 mRNA_1451 0.88 1.3
325,560 + 1.3
325,681 + 0.5
325,814 + 2.0
325,834 + 0.9
325,848 - -3.0
325,852 + 0.2
325,854 - 0.2
325,862 - 3.3
325,862 - -1.1
325,862 - -0.9
325,863 + 0.1
325,868 - 0.2
325,875 + 0.2
325,880 - -1.1
325,884 + -0.9
325,931 - -0.1
325,942 - 0.1
325,943 + -0.3
325,982 - 0.3
325,993 - -0.4
325,994 + -0.2
325,996 + -0.2
325,999 + 2.0
326,000 + 0.1
326,002 + -0.2
326,003 - 0.2
326,008 + 0.8
326,010 + -0.0
326,144 - 0.1
326,302 + -0.8
327,311 - 9820 mRNA_1452 0.49 -0.5
327,426 - 9820 mRNA_1452 0.55 -0.3
327,461 - 9820 mRNA_1452 0.56 -0.1
328,324 - 1.8
328,516 + 0.4
328,803 + 9821 mRNA_1453 0.15 -0.0
328,811 + 9821 mRNA_1453 0.15 0.5
328,812 - 9821 mRNA_1453 0.15 0.3
329,236 + 9821 mRNA_1453 0.45 -0.4