Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1451

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1450: 9818 - K20826 RPAP1 RNA polymerase II-associated protein 1, at 317721 to 321691 9818 mRNA_1451: 9819 - K11987 PTGS2, COX2 prostaglandin-endoperoxide synthase 2, at 321832 to 325764 9819 mRNA_1452: 9820 - K07241 nixA high-affinity nickel-transport protein, at 326244 to 328401 9820

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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321,083 - 9818 mRNA_1450 0.85 -1.7
321,146 - 9818 mRNA_1450 0.86 -0.8
321,152 - 9818 mRNA_1450 0.86 0.0
321,153 + 9818 mRNA_1450 0.86 2.6
321,644 - 2.3
321,860 + -0.1
321,903 - -0.8
322,279 - 9819 mRNA_1451 0.11 -0.3
322,898 - 9819 mRNA_1451 0.27 0.8
323,660 + 9819 mRNA_1451 0.46 1.4
323,737 + 9819 mRNA_1451 0.48 -0.7
323,777 - 9819 mRNA_1451 0.49 -1.0
324,666 + 9819 mRNA_1451 0.72 -0.2
324,786 + 9819 mRNA_1451 0.75 0.8
324,792 + 9819 mRNA_1451 0.75 -0.1
324,956 + 9819 mRNA_1451 0.79 -1.7
325,090 - 9819 mRNA_1451 0.83 -0.8
325,261 - 9819 mRNA_1451 0.87 1.2
325,279 + 9819 mRNA_1451 0.88 1.3
325,560 + 1.3
325,681 + 0.5
325,814 + 2.0
325,834 + 0.9
325,848 - -3.0
325,852 + 0.2
325,854 - 0.2
325,862 - 3.3
325,862 - -1.1
325,862 - -0.9
325,863 + 0.1
325,868 - 0.2
325,875 + 0.2
325,880 - -1.1
325,884 + -0.9
325,931 - -0.1
325,942 - 0.1
325,943 + -0.3
325,982 - 0.3
325,993 - -0.4
325,994 + -0.2
325,996 + -0.2
325,999 + 2.0
326,000 + 0.1
326,002 + -0.2
326,003 - 0.2
326,008 + 0.8
326,010 + -0.0
326,144 - 0.1
326,302 + -0.8