Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1438

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1438: 9806 - Hypothetical Protein, at 280347 to 281494 9806 mRNA_1439: 9807 - K03544 clpX, CLPX ATP-dependent Clp protease ATP-binding subunit ClpX, at 281812 to 284553 9807

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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279,427 - 0.3
279,457 + 0.7
279,607 + 0.1
279,617 + -1.5
279,763 + 1.0
279,768 + 1.4
280,325 - 1.2
280,611 - 9806 mRNA_1438 0.23 1.9
280,700 - 9806 mRNA_1438 0.31 -0.6
280,901 + 9806 mRNA_1438 0.48 -0.3
280,917 + 9806 mRNA_1438 0.50 -0.6
281,024 - 9806 mRNA_1438 0.59 -1.0
281,048 - 9806 mRNA_1438 0.61 -0.2
281,084 + 9806 mRNA_1438 0.64 -0.3
281,231 + 9806 mRNA_1438 0.77 2.2
281,357 + 9806 mRNA_1438 0.88 -1.1
281,363 - 9806 mRNA_1438 0.89 0.5
281,371 + 9806 mRNA_1438 0.89 1.6
281,619 - -1.0
281,629 - 0.4
281,739 - 1.0
281,753 - -0.1
281,756 + 0.3
281,757 + -0.5
281,888 - 0.4
281,941 - -0.1
281,944 + -0.1
282,052 - 0.2
282,195 - 9807 mRNA_1439 0.14 0.6