Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1388

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1387: 9755 - BLAST bromodomain-containing protein 8 [Cryptococcus ne..., at 148746 to 149519 9755 mRNA_1388: 9756 - K00698 CHS1 chitin synthase, at 150149 to 154291 9756

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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149,278 - 9755 mRNA_1387 0.69 -0.6
149,404 - 9755 mRNA_1387 0.85 -2.3
149,417 + 9755 mRNA_1387 0.87 0.6
149,719 + 0.1
149,727 - 1.7
149,739 - -0.5
149,990 + 0.3
150,006 + 1.7
150,097 - 1.1
150,279 + 1.0
150,566 - 9756 mRNA_1388 0.10 1.3
150,777 + 9756 mRNA_1388 0.15 2.0
151,319 - 9756 mRNA_1388 0.28 0.9
151,568 + 9756 mRNA_1388 0.34 -0.4
151,593 + 9756 mRNA_1388 0.35 0.7
151,881 - 9756 mRNA_1388 0.42 -0.1
152,049 + 9756 mRNA_1388 0.46 0.8
152,182 + 9756 mRNA_1388 0.49 0.5
152,188 + 9756 mRNA_1388 0.49 -0.5
152,606 - 9756 mRNA_1388 0.59 -0.4
152,715 + 9756 mRNA_1388 0.62 -0.4
152,773 - 9756 mRNA_1388 0.63 -0.2
152,865 + 9756 mRNA_1388 0.66 0.4
153,326 + 9756 mRNA_1388 0.77 -0.1
153,917 + 0.8
154,059 - 0.3
154,182 + -0.8
154,755 - 1.2
154,788 + 0.7
154,918 - 0.3
155,056 + 1.4
155,060 + 0.8
155,069 - 0.8
155,091 - 2.2
155,127 + 0.2
155,216 + 1.0
155,226 + -0.2
155,231 - 1.3
155,239 + 0.0
155,249 + -0.7