Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1387

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1386: 9754 - K06966 K06966 uncharacterized protein, at 147599 to 148550 9754 mRNA_1387: 9755 - BLAST bromodomain-containing protein 8 [Cryptococcus ne..., at 148746 to 149519 9755 mRNA_1388: 9756 - K00698 CHS1 chitin synthase, at 150149 to 154291 9756

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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148,066 + 9754 mRNA_1386 0.49 0.5
148,071 - 9754 mRNA_1386 0.50 -0.1
148,205 + 9754 mRNA_1386 0.64 -0.6
148,213 + 9754 mRNA_1386 0.64 -2.8
148,517 - -0.9
148,551 + 0.3
148,799 + 1.2
148,816 + -0.7
148,820 - 0.7
148,831 + 9755 mRNA_1387 0.11 0.9
148,841 - 9755 mRNA_1387 0.12 -0.3
148,956 - 9755 mRNA_1387 0.27 0.1
149,117 - 9755 mRNA_1387 0.48 1.5
149,131 - 9755 mRNA_1387 0.50 0.4
149,135 + 9755 mRNA_1387 0.50 2.4
149,137 - 9755 mRNA_1387 0.51 2.8
149,138 + 9755 mRNA_1387 0.51 0.5
149,278 - 9755 mRNA_1387 0.69 -0.6
149,404 - 9755 mRNA_1387 0.85 -2.3
149,417 + 9755 mRNA_1387 0.87 0.6
149,719 + 0.1
149,727 - 1.7
149,739 - -0.5
149,990 + 0.3
150,006 + 1.7
150,097 - 1.1
150,279 + 1.0