Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1340

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1339: 9707 - Hypothetical Protein, at 33554 to 34142 9707 mRNA_1340: 9708 - KOG3968 Atrazine chlorohydrolase/guanine deaminase, at 34263 to 36045 9708

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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33,275 - 0.7
33,279 - 0.6
33,291 + 0.5
33,424 - 1.6
33,429 + 1.5
33,532 - -0.2
33,579 - -0.6
33,583 + 1.7
33,596 - -0.8
33,617 + 9707 mRNA_1339 0.11 -0.2
33,627 + 9707 mRNA_1339 0.12 0.1
33,644 - 9707 mRNA_1339 0.15 -0.5
33,669 - 9707 mRNA_1339 0.20 -0.4
33,697 + 9707 mRNA_1339 0.24 0.0
33,773 - 9707 mRNA_1339 0.37 -0.4
33,780 - 9707 mRNA_1339 0.38 2.1
34,141 + 2.2
34,179 + -0.2
34,336 - 0.1
34,340 + -0.4
34,391 - -0.1
34,635 - 9708 mRNA_1340 0.21 0.1
34,661 + 9708 mRNA_1340 0.22 0.2
34,945 - 9708 mRNA_1340 0.38 0.2
35,493 - 9708 mRNA_1340 0.69 1.6
35,503 - 9708 mRNA_1340 0.70 0.7
35,811 + 9708 mRNA_1340 0.87 -0.1
35,936 + -1.2
35,950 + 0.3
35,951 - -0.6
36,046 + -0.4
36,191 + 0.3
36,208 - -0.3
36,253 - 1.3
36,379 - -0.3
36,499 + 1.3
36,511 + -1.1
36,584 - -0.3
36,653 + 4.0
36,668 - -0.8
36,833 - 2.8
36,835 - -0.3
36,963 - 0.1
36,990 + -0.2
36,995 + 0.9