Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1269

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1268: 9636 - K03790 rimJ ribosomal-protein-alanine N-acetyltransferase, at 795406 to 796307 9636 mRNA_1269: 9637 - K15628 PXA ATP-binding cassette, subfamily D (ALD), peroxisomal long-chain fatty acid import protein, at 796569 to 799890 9637 mRNA_1270: 9638 - KOG0254 Predicted transporter (major facilitator superfamily), at 800593 to 802936 9638

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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795,874 - 9636 mRNA_1268 0.52 1.1
795,916 - 9636 mRNA_1268 0.57 0.3
795,984 + 9636 mRNA_1268 0.64 1.5
796,039 + 9636 mRNA_1268 0.70 0.4
796,170 - 9636 mRNA_1268 0.85 -0.4
796,274 + -1.1
796,275 - 0.7
796,310 + -1.1
796,316 + -0.2
796,356 + -0.3
796,591 - 1.3
796,597 + 0.7
796,615 - 0.8
796,751 + -0.2
796,771 + 0.4
796,840 + 0.0
797,178 - 9637 mRNA_1269 0.18 -0.0
797,341 + 9637 mRNA_1269 0.23 -0.5
797,595 + 9637 mRNA_1269 0.31 -1.1
798,025 + 9637 mRNA_1269 0.44 0.2
798,184 - 9637 mRNA_1269 0.49 1.8
798,333 - 9637 mRNA_1269 0.53 1.2
798,342 + 9637 mRNA_1269 0.53 1.0
798,393 + 9637 mRNA_1269 0.55 0.6
798,925 + 9637 mRNA_1269 0.71 -0.4
798,938 + 9637 mRNA_1269 0.71 -1.1
799,202 - 9637 mRNA_1269 0.79 0.3
799,471 - 9637 mRNA_1269 0.87 2.1
799,533 + 9637 mRNA_1269 0.89 -0.2
799,623 - -0.6
799,635 - 1.6
799,778 - -0.5
799,917 + 0.6
799,946 + 0.5
799,974 - 1.7
800,046 - 0.2
800,083 - 0.0
800,125 - -0.1
800,198 - 0.2
800,220 - -2.3
800,240 - 1.5
800,242 + 0.4
800,245 + 1.8
800,246 - -1.1
800,247 + -0.9
800,366 + 0.4
800,508 - 0.3
800,516 + -0.5
800,593 - 1.2
800,637 - -0.1
800,652 - 0.6
800,694 - 0.2
800,711 - 0.1
800,721 + -0.0