Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1244

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1243: 9611 - K02493 hemK, prmC, HEMK release factor glutamine methyltransferase, at 738287 to 739305 9611 mRNA_1244: 9612 - SUPERFAMILY--SSF52047, at 739687 to 741319 9612 mRNA_1245: 9613 - HMMPfam-Magnesium transporter NIPA-PF05653,SUPERFAMILY--SSF103481, at 741721 to 743435 9613

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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739,182 + 9611 mRNA_1243 0.88 1.1
739,310 + 0.5
739,455 - 0.6
739,458 - 1.3
739,461 + 0.1
739,480 + 0.4
739,596 - 0.5
739,606 - 0.7
739,609 - 0.5
739,628 - -1.4
739,634 - 0.6
739,635 + 0.2
739,639 + 2.5
739,770 + 0.8
739,771 - -0.7
739,778 + 0.4
739,782 + 1.0
739,914 - 9612 mRNA_1244 0.14 0.1
739,918 - 9612 mRNA_1244 0.14 1.5
739,963 - 9612 mRNA_1244 0.17 -0.5
740,346 + 9612 mRNA_1244 0.40 0.1
740,411 - 9612 mRNA_1244 0.44 -0.3
740,421 + 9612 mRNA_1244 0.45 0.0
740,555 - 9612 mRNA_1244 0.53 0.7
740,562 + 9612 mRNA_1244 0.54 -0.2
740,608 + 9612 mRNA_1244 0.56 0.4
740,635 + 9612 mRNA_1244 0.58 -0.3
740,906 + 9612 mRNA_1244 0.75 0.7
741,093 - 9612 mRNA_1244 0.86 1.3
741,258 + 0.1
741,354 + 0.5
741,529 + 1.1
741,636 - -2.0
741,654 - -0.7
741,660 - 2.0
741,948 - 9613 mRNA_1245 0.13 1.0