Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1228

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1227: 9595 - KOG1318 Helix loop helix transcription factor EB, at 696629 to 699042 9595 mRNA_1228: 9596 - K00693 GYS glycogen synthase, at 699587 to 703104 9596 mRNA_1229: 9597 - SUPERFAMILY--SSF52047, at 703452 to 704884 9597

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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699,044 - 1.5
699,135 + -0.6
699,138 + 2.0
699,169 + -0.5
699,250 - 1.1
699,253 - -1.2
699,262 + 1.1
699,263 + -1.4
699,263 - 1.1
699,278 + -0.3
699,326 - 2.1
699,346 + -0.2
699,356 - -1.0
699,358 - 0.3
699,368 - 0.7
699,377 + -0.4
699,379 + 1.3
699,389 - 0.6
699,409 - 0.7
699,409 + -0.2
699,423 - -0.4
699,423 - -0.5
699,425 - -0.7
699,432 - 1.8
699,449 - -0.3
699,473 + 0.6
699,475 + 0.2
699,476 - -0.4
699,487 + -0.1
699,487 - 0.1
699,502 + 0.2
699,504 + 1.0
699,519 - 1.7
699,520 - -0.2
699,531 - -0.2
699,533 - 0.7
699,534 + -0.6
699,669 + -0.1
699,671 + 0.9
699,677 + 1.6
699,684 + -1.1
699,691 + 1.4
699,698 + 0.2
699,828 + 0.4
699,831 - 0.0
699,831 - 2.1
699,834 - 1.3
700,568 + 9596 mRNA_1228 0.28 0.5
700,722 - 9596 mRNA_1228 0.32 -0.7
701,166 + 9596 mRNA_1228 0.45 0.2
701,288 - 9596 mRNA_1228 0.48 0.7
701,323 - 9596 mRNA_1228 0.49 1.1
701,829 - 9596 mRNA_1228 0.64 -0.4
702,187 - 9596 mRNA_1228 0.74 0.3
702,191 + 9596 mRNA_1228 0.74 -1.6
702,200 - 9596 mRNA_1228 0.74 1.1
702,207 - 9596 mRNA_1228 0.74 0.4
702,209 + 9596 mRNA_1228 0.75 0.8
702,763 - 1.3
702,787 + 1.7
703,072 - 0.3
703,125 - 2.1
703,323 + 0.2
703,326 - -0.6
703,650 - 9597 mRNA_1229 0.14 1.5
704,070 + 9597 mRNA_1229 0.43 -0.8