Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1224

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1223: 9591 - PRINTS-Proline rich extensin signature-PR01217, at 687384 to 689890 9591 mRNA_1224: 9592 - BLAST catalytic [Ascochyta rabiei], at 690092 to 691295 9592 mRNA_1225: 9593 - KOG2195 Transferrin receptor and related proteins containing the protease-associated (PA) domain, at 691442 to 693362 9593

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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689,807 + 0.3
689,863 - -0.1
689,959 + 0.9
689,968 + 0.3
689,968 - 0.0
689,972 + 0.7
690,032 + -1.1
690,045 + 0.8
690,189 + 0.3
690,304 + 9592 mRNA_1224 0.18 -0.5
690,320 + 9592 mRNA_1224 0.19 1.2
690,324 + 9592 mRNA_1224 0.19 -0.9
690,457 + 9592 mRNA_1224 0.30 -0.0
690,466 - 9592 mRNA_1224 0.31 0.8
690,594 - 9592 mRNA_1224 0.42 -1.1
690,760 - 9592 mRNA_1224 0.55 0.8
691,480 + 1.4
691,775 - 9593 mRNA_1225 0.17 1.2
691,821 - 9593 mRNA_1225 0.20 0.2
692,070 + 9593 mRNA_1225 0.33 -0.7
692,201 - 9593 mRNA_1225 0.40 0.9