Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1217

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1216: 9584 - BLAST secreted protein [Melampsora larici-populina 98AG31], at 669963 to 671497 9584 mRNA_1217: 9585 - K10580 UBE2N, BLU, UBC13 ubiquitin-conjugating enzyme E2 N, at 672006 to 672875 9585 mRNA_1218: 9586 - SUPERFAMILY--SSF52047, at 673379 to 675043 9586

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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671,072 - 9584 mRNA_1216 0.72 0.8
671,466 - 1.6
672,064 - -0.6
672,149 - 9585 mRNA_1217 0.16 -1.0
672,446 + 9585 mRNA_1217 0.51 -1.4
672,625 + 9585 mRNA_1217 0.71 -1.3
672,649 - 9585 mRNA_1217 0.74 -1.9
672,749 + 9585 mRNA_1217 0.85 1.8
672,755 + 9585 mRNA_1217 0.86 -0.2
673,063 - 0.5
673,063 + 0.5
673,080 - -0.2
673,233 + 0.0
673,235 + -0.1
673,268 - -0.9
673,404 - -0.2
673,462 + -1.3
673,875 - 9586 mRNA_1218 0.30 -0.4