Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1191

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1190: 9558 - K05747 WAS Wiskott-Aldrich syndrome protein, at 613058 to 614661 9558 mRNA_1191: 9559 - KOG3033 Predicted PhzC/PhzF-type epimerase, at 615062 to 616261 9559 mRNA_1192: 9560 - KOG2504 Monocarboxylate transporter, at 616392 to 618414 9560

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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614,552 - 0.6
614,577 + 2.2
614,713 - 1.2
614,740 - 0.7
614,964 - 1.0
614,974 + -0.0
614,990 + -0.0
614,991 - 0.3
614,995 + 1.5
615,125 - -1.1
615,138 - 2.0
615,149 + 0.1
615,152 - 0.6
615,377 + 9559 mRNA_1191 0.26 1.4
615,405 - 9559 mRNA_1191 0.29 0.6
615,405 - 9559 mRNA_1191 0.29 1.3
615,409 - 9559 mRNA_1191 0.29 1.3
615,486 + 9559 mRNA_1191 0.35 0.0
615,577 - 9559 mRNA_1191 0.43 1.8
615,708 - 9559 mRNA_1191 0.54 0.8
615,718 + 9559 mRNA_1191 0.55 0.1
615,754 + 9559 mRNA_1191 0.58 -0.9
616,021 - 9559 mRNA_1191 0.80 3.1
616,056 - 9559 mRNA_1191 0.83 -1.2
616,129 - 9559 mRNA_1191 0.89 1.1
616,130 + 9559 mRNA_1191 0.89 0.5
616,130 + 9559 mRNA_1191 0.89 0.8
616,144 - 1.0
616,153 + -0.2
616,283 + 0.4
616,305 - 0.9
616,405 + -0.5
616,597 - 9560 mRNA_1192 0.10 0.1
616,608 + 9560 mRNA_1192 0.11 0.0
616,618 + 9560 mRNA_1192 0.11 -0.1
616,730 + 9560 mRNA_1192 0.17 1.1
616,731 + 9560 mRNA_1192 0.17 -0.5
616,735 + 9560 mRNA_1192 0.17 0.2
616,844 - 9560 mRNA_1192 0.22 -0.3
616,888 - 9560 mRNA_1192 0.25 2.4
616,898 + 9560 mRNA_1192 0.25 -0.6
616,992 - 9560 mRNA_1192 0.30 0.3
617,014 - 9560 mRNA_1192 0.31 -0.1
617,171 + 9560 mRNA_1192 0.39 -1.1