Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1175

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1174: 9542 - K15190 MEPCE, BCDIN3 7SK snRNA methylphosphate capping enzyme, at 575723 to 577057 9542 mRNA_1175: 9543 - Hypothetical Protein, at 577542 to 578636 9543 mRNA_1176: 9544 - Hypothetical Protein, at 578866 to 579597 9544

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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576,542 - 9542 mRNA_1174 0.61 -0.7
576,548 + 9542 mRNA_1174 0.62 0.2
576,571 + 9542 mRNA_1174 0.64 -0.1
576,600 - 9542 mRNA_1174 0.66 0.5
576,649 - 9542 mRNA_1174 0.69 -0.5
576,688 - 9542 mRNA_1174 0.72 1.6
576,742 - 9542 mRNA_1174 0.76 0.2
576,745 - 9542 mRNA_1174 0.77 0.2
576,857 + 9542 mRNA_1174 0.85 -0.8
576,979 + -0.0
576,984 + -1.6
577,026 + -0.1
577,118 - 0.9
577,139 - -2.0
577,610 + 0.4
577,639 + -0.5
577,824 - 9543 mRNA_1175 0.26 -0.4
577,854 + 9543 mRNA_1175 0.28 0.0
577,881 - 9543 mRNA_1175 0.31 0.3
577,991 + 9543 mRNA_1175 0.41 1.5
578,076 - 9543 mRNA_1175 0.49 1.2
578,084 + 9543 mRNA_1175 0.49 -0.1
578,485 - 9543 mRNA_1175 0.86 -0.2
578,787 + 0.0
578,798 - 0.4
578,936 + -0.2
578,954 - 9544 mRNA_1176 0.12 1.4
579,077 - 9544 mRNA_1176 0.29 1.1
579,097 + 9544 mRNA_1176 0.32 -1.0
579,097 + 9544 mRNA_1176 0.32 1.3
579,377 + 9544 mRNA_1176 0.70 -0.3
579,410 + 9544 mRNA_1176 0.74 0.5
579,415 - 9544 mRNA_1176 0.75 0.6
579,422 - 9544 mRNA_1176 0.76 1.6
579,547 + -0.4
579,554 - 0.0
579,555 + 0.6