Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1158

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1157: 9525 - K14818 SQT1 ribosome assembly protein SQT1, at 531850 to 533484 9525 mRNA_1158: 9526 - Hypothetical Protein, at 533999 to 537881 9526 mRNA_1159: 9527 - HMMPfam-Archaeal ATPase-PF01637,SUPERFAMILY--SSF52540, at 538557 to 540883 9527

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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533,518 - 1.0
533,556 + 0.4
533,635 - 0.7
533,644 + -0.4
533,667 - 0.4
533,673 + 0.4
533,674 + 0.6
533,681 + 0.7
533,688 + -0.4
533,818 - 1.2
533,818 - 0.1
533,825 + 1.3
533,916 - 0.3
534,120 + -0.3
534,123 - 0.0
534,127 - -0.7
534,133 + 0.6
534,136 + 0.3
534,146 + -0.2
534,148 - 0.8
534,286 + -1.2
534,416 + 9526 mRNA_1158 0.11 -0.3
534,419 - 9526 mRNA_1158 0.11 -0.8
534,879 + 9526 mRNA_1158 0.23 -0.2
535,273 - 9526 mRNA_1158 0.33 -0.8
535,280 + 9526 mRNA_1158 0.33 1.1
535,426 + 9526 mRNA_1158 0.37 -0.2
535,753 + 9526 mRNA_1158 0.45 0.0
536,451 + 9526 mRNA_1158 0.63 -0.1
536,651 + 9526 mRNA_1158 0.68 2.2
536,752 + 9526 mRNA_1158 0.71 1.4
537,225 + 9526 mRNA_1158 0.83 1.4
537,324 + 9526 mRNA_1158 0.86 -0.8
537,465 - 9526 mRNA_1158 0.89 0.1
537,481 - 9526 mRNA_1158 0.90 2.3
537,757 + 1.0
537,854 - 1.7
537,894 - -0.8
538,038 + -0.5
538,041 + 1.5
538,297 + -1.4
538,306 + -0.1
538,337 - 1.8
538,499 + 0.7
538,513 - 1.6
538,513 - 0.2
538,516 - -0.1
538,646 - 0.2
538,661 - -0.4
538,668 + -1.9
538,668 + -0.6