Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1149

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1148: 9516 - K02923 RP-L38e, RPL38 large subunit ribosomal protein L38e, at 517716 to 518527 9516 mRNA_1149: 9517 - Hypothetical Protein, at 519229 to 520018 9517 mRNA_1150: 9518 - Hypothetical Protein, at 520283 to 520867 9518

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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518,576 + 0.6
518,582 + 0.3
518,663 - -0.3
518,750 + -0.5
518,869 - 0.4
519,169 - 0.6
519,278 - -0.2
519,441 + 9517 mRNA_1149 0.27 -1.0
519,482 - 9517 mRNA_1149 0.32 0.2
519,621 + 9517 mRNA_1149 0.50 0.3
519,859 - 9517 mRNA_1149 0.80 -1.2
519,890 - 9517 mRNA_1149 0.84 1.6
520,185 + 2.8
520,296 - -0.7
520,489 + 9518 mRNA_1150 0.35 0.0
520,503 - 9518 mRNA_1150 0.38 -1.4
520,512 - 9518 mRNA_1150 0.39 1.7
520,783 + 9518 mRNA_1150 0.85 1.2
520,787 + 9518 mRNA_1150 0.86 1.5
520,804 + 9518 mRNA_1150 0.89 0.0
520,831 + -0.2
520,846 + 0.7
520,902 + -0.3
520,958 - 1.6