Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1144

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1143: 9511 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 505667 to 510461 9511 mRNA_1144: 9512 - K13355 NUDT19 nucleoside diphosphate-linked moiety X motif 19, mitochondrial, at 510566 to 511961 9512 mRNA_1145: 9513 - K00669 AANAT arylalkylamine N-acetyltransferase, at 512734 to 513942 9513

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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510,078 + 0.6
510,135 + 0.8
510,302 - -0.0
510,587 - -1.5
510,591 + 0.0
510,717 + 9512 mRNA_1144 0.11 0.2
510,728 - 9512 mRNA_1144 0.12 2.1
510,733 + 9512 mRNA_1144 0.12 0.2
511,071 - 9512 mRNA_1144 0.36 0.8
511,465 - 9512 mRNA_1144 0.64 2.2
511,469 - 9512 mRNA_1144 0.65 1.5
511,507 + 9512 mRNA_1144 0.67 -1.5
511,917 + 0.2
511,961 - -0.3
512,074 + -2.7
512,088 + 1.6
512,095 + 0.2
512,226 + 0.9
512,228 + 0.2
512,356 - 0.4
512,392 + -0.1
512,396 + 1.2
512,427 + 1.5
512,429 - -0.5
512,431 + 1.0
512,529 + -1.1
512,815 + -1.3