Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1139

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1138: 9506 - K12598 MTR4, SKIV2L2 ATP-dependent RNA helicase DOB1, at 495296 to 498898 9506 mRNA_1139: 9507 - KOG0948 Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily, at 499455 to 501152 9507 mRNA_1140: 9508 - Hypothetical Protein, at 501144 to 502364 9508

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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498,904 + 2.0
498,905 - 0.5
499,015 - 1.1
499,031 + -2.2
499,042 + 2.2
499,058 - -0.3
499,059 - 0.2
499,063 + -0.6
499,090 + 0.4
499,169 - -0.5
499,182 + 0.1
499,276 + 1.9
499,377 + -0.2
499,503 - 1.5
499,504 - -0.7
499,523 + -0.5
499,795 - 9507 mRNA_1139 0.20 0.2
500,526 + 9507 mRNA_1139 0.63 1.1
500,934 - 9507 mRNA_1139 0.87 0.9
501,104 + -0.7
501,115 + -0.0
501,514 + 9508 mRNA_1140 0.30 -0.3
501,645 + 9508 mRNA_1140 0.41 0.6
501,657 - 9508 mRNA_1140 0.42 0.1
501,665 + 9508 mRNA_1140 0.43 -0.1
501,711 - 9508 mRNA_1140 0.46 0.4
501,725 + 9508 mRNA_1140 0.48 0.7
501,819 + 9508 mRNA_1140 0.55 -0.7
501,830 - 9508 mRNA_1140 0.56 -0.0
501,948 - 9508 mRNA_1140 0.66 0.2
501,979 - 9508 mRNA_1140 0.68 -0.1
501,980 - 9508 mRNA_1140 0.68 -0.0
502,126 + 9508 mRNA_1140 0.80 2.5
502,134 - 9508 mRNA_1140 0.81 1.1
502,139 + 9508 mRNA_1140 0.81 -0.8