Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1128

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1127: 9495 - K00143 LYS2 L-aminoadipate-semialdehyde dehydrogenase, at 466494 to 471179 9495 mRNA_1128: 9496 - Interpro Arrestin (or S-antigen), N-terminal domain 0, at 471353 to 475855 9496 mRNA_1129: 9497 - K12391 AP1G1 AP-1 complex subunit gamma-1, at 476023 to 479289 9497

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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470,633 - 9495 mRNA_1127 0.88 -2.5
470,676 + 9495 mRNA_1127 0.89 -1.1
470,689 + 9495 mRNA_1127 0.90 -1.1
470,770 - -1.8
470,934 + -2.0
471,228 - 0.9
471,231 + -0.4
471,233 - 0.7
471,234 - -0.3
471,240 - 0.0
471,253 + 0.9
471,384 - 0.6
471,409 - -1.7
471,421 + 0.8
471,535 + 0.7
471,569 - 1.9
471,588 + 0.0
471,588 + 0.7
471,599 + 2.6
471,601 - -0.2
471,731 - 0.7
471,844 - 9496 mRNA_1128 0.11 -0.9
471,912 - 9496 mRNA_1128 0.12 2.7
472,262 + 9496 mRNA_1128 0.20 0.1
472,278 - 9496 mRNA_1128 0.21 1.3
472,499 - 9496 mRNA_1128 0.25 0.2
472,563 + 9496 mRNA_1128 0.27 -0.1
472,616 + 9496 mRNA_1128 0.28 -1.1
472,774 + 9496 mRNA_1128 0.32 0.1
472,933 + 9496 mRNA_1128 0.35 0.9
473,215 - 9496 mRNA_1128 0.41 1.1
473,234 + 9496 mRNA_1128 0.42 1.2
473,466 - 9496 mRNA_1128 0.47 -2.3
473,572 + 9496 mRNA_1128 0.49 -0.6
473,931 - 9496 mRNA_1128 0.57 -0.0
473,948 + 9496 mRNA_1128 0.58 2.0
474,227 + 9496 mRNA_1128 0.64 2.6
474,243 - 9496 mRNA_1128 0.64 0.7
474,244 - 9496 mRNA_1128 0.64 1.7
474,949 + 9496 mRNA_1128 0.80 0.3
475,057 + 9496 mRNA_1128 0.82 -0.6
475,127 - 9496 mRNA_1128 0.84 0.1
475,402 + 9496 mRNA_1128 0.90 2.5
475,680 + 1.6
475,815 - 0.7
475,862 + -0.5
476,143 - 0.0
476,356 + 9497 mRNA_1129 0.10 -0.3
476,754 - 9497 mRNA_1129 0.22 0.3