Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1109

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1108: 9476 - KOG1134 Uncharacterized conserved protein, at 422767 to 426748 9476 mRNA_1109: 9477 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 426954 to 427895 9477 mRNA_1110: 9478 - Hypothetical Protein, at 428517 to 429913 9478

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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426,175 + 9476 mRNA_1108 0.86 0.4
426,297 - 9476 mRNA_1108 0.89 1.3
426,298 + 9476 mRNA_1108 0.89 0.8
426,306 - 9476 mRNA_1108 0.89 0.3
426,371 - 0.9
426,449 + -1.2
426,544 + -0.0
426,617 - 0.0
426,797 + -0.5
426,860 + -0.0
426,866 - 0.2
426,876 + 1.1
426,876 + 0.5
426,884 + 0.7
427,001 + 2.2
427,034 + 0.7
427,037 + 0.2
427,055 + 9477 mRNA_1109 0.11 -0.3
427,143 - 9477 mRNA_1109 0.20 0.2
427,296 + 9477 mRNA_1109 0.36 -0.6
427,308 + 9477 mRNA_1109 0.38 -0.4
427,347 - 9477 mRNA_1109 0.42 0.3
427,355 - 9477 mRNA_1109 0.43 -0.3
427,472 + 9477 mRNA_1109 0.55 -0.1
427,508 + 9477 mRNA_1109 0.59 0.4
427,559 + 9477 mRNA_1109 0.64 0.1
427,559 + 9477 mRNA_1109 0.64 -0.7
427,605 - 9477 mRNA_1109 0.69 -0.0
427,750 - 9477 mRNA_1109 0.85 0.8
427,758 + 9477 mRNA_1109 0.85 -0.2
427,866 + 0.2
427,892 - 1.7
427,899 + -1.7
427,899 + -0.6
427,989 - 0.1
428,080 + -0.2
428,242 + 0.4
428,486 - 0.9
428,502 - 0.1
428,657 + 9478 mRNA_1110 0.10 -1.1
428,658 + 9478 mRNA_1110 0.10 -1.1
428,665 - 9478 mRNA_1110 0.11 -0.2
428,805 - 9478 mRNA_1110 0.21 0.6
428,894 - 9478 mRNA_1110 0.27 1.5