Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1108

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1107: 9475 - KOG0123 Polyadenylate-binding protein (RRM superfamily), at 421636 to 422494 9475 mRNA_1108: 9476 - KOG1134 Uncharacterized conserved protein, at 422767 to 426748 9476 mRNA_1109: 9477 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 426954 to 427895 9477

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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422,400 - 9475 mRNA_1107 0.89 -0.3
422,564 + -0.8
422,568 + 1.3
422,674 + 1.4
422,705 - 0.9
422,753 + -0.7
422,864 + -0.8
422,866 - 2.0
423,016 + 0.2
423,051 + 0.1
423,241 - 9476 mRNA_1108 0.12 0.0
423,590 - 9476 mRNA_1108 0.21 -2.0
423,853 - 9476 mRNA_1108 0.27 -2.0
423,904 - 9476 mRNA_1108 0.29 0.4
424,010 - 9476 mRNA_1108 0.31 -0.6
424,461 + 9476 mRNA_1108 0.43 -0.5
424,666 - 9476 mRNA_1108 0.48 -0.4
424,843 + 9476 mRNA_1108 0.52 0.0
424,926 - 9476 mRNA_1108 0.54 0.7
424,988 - 9476 mRNA_1108 0.56 -0.6
425,177 - 9476 mRNA_1108 0.61 -0.8
425,198 + 9476 mRNA_1108 0.61 -2.2
425,237 - 9476 mRNA_1108 0.62 0.8
425,419 - 9476 mRNA_1108 0.67 1.3
425,836 - 9476 mRNA_1108 0.77 1.0
426,175 + 9476 mRNA_1108 0.86 0.4
426,297 - 9476 mRNA_1108 0.89 1.3
426,298 + 9476 mRNA_1108 0.89 0.8
426,306 - 9476 mRNA_1108 0.89 0.3
426,371 - 0.9
426,449 + -1.2
426,544 + -0.0
426,617 - 0.0
426,797 + -0.5
426,860 + -0.0
426,866 - 0.2
426,876 + 1.1
426,876 + 0.5
426,884 + 0.7
427,001 + 2.2
427,034 + 0.7
427,037 + 0.2
427,055 + 9477 mRNA_1109 0.11 -0.3
427,143 - 9477 mRNA_1109 0.20 0.2
427,296 + 9477 mRNA_1109 0.36 -0.6
427,308 + 9477 mRNA_1109 0.38 -0.4
427,347 - 9477 mRNA_1109 0.42 0.3
427,355 - 9477 mRNA_1109 0.43 -0.3
427,472 + 9477 mRNA_1109 0.55 -0.1
427,508 + 9477 mRNA_1109 0.59 0.4
427,559 + 9477 mRNA_1109 0.64 0.1
427,559 + 9477 mRNA_1109 0.64 -0.7
427,605 - 9477 mRNA_1109 0.69 -0.0