Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1103

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1102: 9470 - K03327 TC.MATE, SLC47A, norM, mdtK, dinF multidrug resistance protein, MATE family, at 407441 to 409508 9470 mRNA_1103: 9471 - KOG0252 Inorganic phosphate transporter, at 410090 to 412457 9471 mRNA_1104: 9472 - K02540 MCM2 DNA replication licensing factor MCM2, at 413444 to 416551 9472

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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409,107 + 9470 mRNA_1102 0.81 -1.8
409,223 + 9470 mRNA_1102 0.86 -0.2
409,230 + 9470 mRNA_1102 0.87 0.0
409,513 + 0.3
409,771 - -0.1
409,790 + -0.3
409,800 - -0.2
409,827 + 0.5
409,907 + 0.3
409,935 + 0.9
409,966 - 0.4
410,045 - 0.5
410,046 + -0.2
410,105 + 0.5
410,384 - 9471 mRNA_1103 0.12 -0.4
410,402 + 9471 mRNA_1103 0.13 2.3
410,645 + 9471 mRNA_1103 0.23 0.8
411,394 + 9471 mRNA_1103 0.55 0.2
411,652 - 9471 mRNA_1103 0.66 0.7
411,991 - 9471 mRNA_1103 0.80 0.2
412,669 + 0.1
412,752 - -0.4
412,757 - -0.1
412,812 + -0.7
412,826 + 0.2
412,839 + 1.3
412,957 - 1.0
412,957 - 2.8
412,977 + -0.2
412,982 + -0.9
413,091 + 2.3
413,130 - -0.3
413,130 + 1.5
413,137 - 1.1
413,148 - -1.9
413,155 + -0.7
413,211 + 0.1
413,216 + -1.3
413,217 - 1.2
413,218 - 2.8
413,252 + -0.4
413,257 + -0.6
413,269 - 1.0
413,372 + -0.6