Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1075

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1074: 9442 - HMMPfam-Ankyrin repeats (3 copies)-PF12796,ProSiteProfiles-Ankyrin repeat profile.-PS50088,ProSiteProfiles-Ankyrin repeat region circular profile.-PS50297,SUPERFAMILY--SSF48403, at 346068 to 346985 9442 mRNA_1075: 9443 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 347170 to 348411 9443 mRNA_1076: 9444 - K02324 POLE1 DNA polymerase epsilon subunit 1, at 348660 to 356355 9444

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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346,283 - 9442 mRNA_1074 0.23 3.2
346,320 - 9442 mRNA_1074 0.27 -1.4
346,326 + 9442 mRNA_1074 0.28 -0.5
346,327 - 9442 mRNA_1074 0.28 0.2
346,496 + 9442 mRNA_1074 0.47 1.3
346,944 + 0.2
346,944 + 0.8
347,065 - -1.3
347,092 + 0.1
347,100 - 0.9
347,206 - -0.2
347,213 + 0.3
347,229 + -0.2
347,238 + -0.2
347,242 + -0.2
347,243 - 0.3
347,247 + -0.3
347,247 + -0.4
347,247 - -0.4
347,248 - -0.4
347,271 + 2.6
347,418 - 9443 mRNA_1075 0.20 0.0
347,527 - 9443 mRNA_1075 0.29 -0.2
347,570 - 9443 mRNA_1075 0.32 -0.3
347,683 - 9443 mRNA_1075 0.41 0.1
347,694 - 9443 mRNA_1075 0.42 0.0
347,980 - 9443 mRNA_1075 0.65 0.2
348,168 + 9443 mRNA_1075 0.80 -0.8
348,276 + 9443 mRNA_1075 0.89 2.5
348,383 + 1.0
348,414 - 0.6
348,443 + 0.8
348,464 - 1.2
348,476 - 0.7
348,495 + 1.9
348,520 - -0.1
348,621 + 1.3
348,691 - 0.2