Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1040

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1039: 9407 - K18723 GLE1 nucleoporin GLE1, at 256702 to 258919 9407 mRNA_1040: 9408 - HMMPfam-NADH(P)-binding-PF13460,SUPERFAMILY--SSF51735, at 259080 to 260427 9408 mRNA_1041: 9409 - K08504 BET1 blocked early in transport 1, at 260898 to 261462 9409

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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258,975 - -1.0
259,067 - 3.0
259,186 - -0.7
259,704 - 9408 mRNA_1040 0.46 -0.9
259,709 - 9408 mRNA_1040 0.47 -0.6
259,845 - 9408 mRNA_1040 0.57 -0.1
260,146 - 9408 mRNA_1040 0.79 0.2
260,172 + 9408 mRNA_1040 0.81 -1.4
260,185 + 9408 mRNA_1040 0.82 2.8
260,276 - 9408 mRNA_1040 0.89 1.0
260,310 + 0.7
260,396 - -0.7
260,456 + 0.3
260,615 + 0.7
260,624 - 0.0
260,635 + -0.9
260,643 + 1.7
260,746 - 0.5
260,901 + 1.7
260,932 + -0.0
261,064 - 9409 mRNA_1041 0.29 0.1
261,085 - 9409 mRNA_1041 0.33 -0.2
261,087 + 9409 mRNA_1041 0.33 -0.2
261,194 - 9409 mRNA_1041 0.52 1.6
261,210 - 9409 mRNA_1041 0.55 -0.3
261,349 - 9409 mRNA_1041 0.80 0.9
261,350 + 9409 mRNA_1041 0.80 0.4
261,355 + 9409 mRNA_1041 0.81 0.7
261,373 + 9409 mRNA_1041 0.84 0.8