Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1009

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1008: 9376 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 193375 to 193873 9376 mRNA_1009: 9377 - K12659 ARG56 N-acetyl-gamma-glutamyl-phosphate reductase / acetylglutamate kinase, at 194159 to 197453 9377 mRNA_1010: 9378 - K16569 TUBGCP2, GCP2 gamma-tubulin complex component 2, at 198113 to 201234 9378

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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193,240 - 1.5
193,418 + 1.2
193,652 - 9376 mRNA_1008 0.56 0.9
193,652 - 9376 mRNA_1008 0.56 0.9
193,668 - 9376 mRNA_1008 0.59 0.4
193,680 + 9376 mRNA_1008 0.61 0.6
193,806 - 9376 mRNA_1008 0.86 0.0
193,830 - 1.8
193,832 + -0.2
193,950 - -0.4
193,953 - -0.2
193,963 - 0.2
193,965 - -0.3
193,971 + -0.6
193,971 - 0.1
193,974 - 0.3
193,974 - 1.5
193,975 + -0.1
193,978 - -0.0
193,988 - 0.0
193,990 + 0.2
194,000 + 0.7
194,104 + -0.8
194,109 - 0.8
194,110 + 1.9
194,112 - -0.0
194,140 + -1.3
194,231 + -3.5
194,236 + -1.7
194,255 - -0.3
194,396 + -4.2
194,402 - -1.1
194,426 - -2.5
194,575 + 9377 mRNA_1009 0.13 -0.4
194,576 + 9377 mRNA_1009 0.13 -4.0
195,021 + 9377 mRNA_1009 0.26 -1.8
195,179 + 9377 mRNA_1009 0.31 -3.7
195,323 + 9377 mRNA_1009 0.35 -3.6
195,497 + 9377 mRNA_1009 0.41 -1.8
195,593 + 9377 mRNA_1009 0.44 -2.2
195,747 + 9377 mRNA_1009 0.48 -1.5
195,921 + 9377 mRNA_1009 0.53 -5.2
196,047 + 9377 mRNA_1009 0.57 -0.5
196,239 + 9377 mRNA_1009 0.63 -4.4
196,327 + 9377 mRNA_1009 0.66 -1.2
196,328 - 9377 mRNA_1009 0.66 -1.9
196,352 + 9377 mRNA_1009 0.67 -5.3
196,397 - 9377 mRNA_1009 0.68 -3.5
196,460 - 9377 mRNA_1009 0.70 -0.9
196,605 - 9377 mRNA_1009 0.74 -2.6
196,653 + 9377 mRNA_1009 0.76 -3.5
196,905 - 9377 mRNA_1009 0.83 -0.9
197,059 - 9377 mRNA_1009 0.88 -1.0
197,078 - 9377 mRNA_1009 0.89 -1.0
197,224 + -4.9
197,237 - -2.3
197,345 + -1.0
197,449 - -0.6
197,506 - 0.9