Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1006

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1005: 9373 - K08794 CAMK1 calcium/calmodulin-dependent protein kinase I, at 186567 to 188548 9373 mRNA_1006: 9374 - KOG4569 Predicted lipase, at 188789 to 191273 9374 mRNA_1007: 9375 - HMMPfam-S1/P1 Nuclease-PF02265,SUPERFAMILY--SSF48537, at 191628 to 193033 9375

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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187,964 + 9373 mRNA_1005 0.70 0.8
187,984 - 9373 mRNA_1005 0.71 1.4
187,984 - 9373 mRNA_1005 0.71 1.0
188,119 - 9373 mRNA_1005 0.78 -0.3
188,172 + 9373 mRNA_1005 0.81 0.0
188,381 - 0.2
188,553 + 0.2
188,565 + 0.4
188,665 - 0.2
188,724 + -0.3
188,859 + 2.9
188,880 + 0.7
189,060 - 9374 mRNA_1006 0.11 -0.4
189,140 - 9374 mRNA_1006 0.14 0.1
189,169 + 9374 mRNA_1006 0.15 -0.1
189,201 - 9374 mRNA_1006 0.17 0.1
189,351 - 9374 mRNA_1006 0.23 0.7
189,647 + 9374 mRNA_1006 0.35 0.1
189,697 - 9374 mRNA_1006 0.37 2.1
189,756 + 9374 mRNA_1006 0.39 1.9
189,770 + 9374 mRNA_1006 0.39 0.3
189,779 + 9374 mRNA_1006 0.40 -0.1
189,855 + 9374 mRNA_1006 0.43 -0.4
190,472 - 9374 mRNA_1006 0.68 1.2
190,635 + 9374 mRNA_1006 0.74 -1.8
190,782 + 9374 mRNA_1006 0.80 0.2
190,919 + 9374 mRNA_1006 0.86 -0.3
190,941 + 9374 mRNA_1006 0.87 0.6
191,002 - 9374 mRNA_1006 0.89 -0.2
191,165 + 0.7
191,619 + 0.1
192,239 + 9375 mRNA_1007 0.43 0.6