Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_849

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_848: 9216 - K17989 SDS, SDH, CHA1 L-serine/L-threonine ammonia-lyase, at 2033096 to 2034366 9216 mRNA_849: 9217 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 2034540 to 2035724 9217

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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2,034,033 - 9216 mRNA_848 0.74 0.2
2,034,056 - 9216 mRNA_848 0.76 1.5
2,034,149 + 9216 mRNA_848 0.83 0.1
2,034,251 + -0.2
2,034,340 - 0.3
2,034,486 - 0.9
2,034,486 - -0.3
2,034,491 + 0.2
2,034,637 + 0.1
2,034,754 - 9217 mRNA_849 0.18 0.2
2,035,339 - 9217 mRNA_849 0.67 0.2
2,035,487 + 9217 mRNA_849 0.80 0.6
2,035,490 + 9217 mRNA_849 0.80 0.7
2,035,531 - 9217 mRNA_849 0.84 1.0
2,035,614 - -0.7
2,035,777 - 1.3
2,035,916 + 0.9
2,035,936 + -1.0
2,035,936 + 0.5
2,035,958 - -0.5
2,035,964 + 0.5
2,036,055 - 0.6
2,036,066 - 0.9
2,036,067 + 0.6
2,036,067 - -1.1
2,036,075 + 1.8
2,036,085 - -0.5
2,036,111 + 1.0
2,036,121 + -1.1
2,036,130 - 0.3
2,036,143 + -0.3
2,036,149 - -1.0
2,036,203 + 0.2
2,036,225 + -0.2
2,036,235 - 0.4
2,036,267 + 0.4
2,036,403 - 0.6
2,036,546 + 1.1
2,036,558 - 2.0
2,036,561 + -1.0
2,036,696 - 1.6
2,036,698 - -0.8
2,036,707 - -0.7
2,036,711 + 1.6
2,036,712 + 1.9