Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_661

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_660: 9028 - K13289 CTSA, CPY cathepsin A (carboxypeptidase C), at 1590128 to 1592290 9028 mRNA_661: 9029 - Hypothetical Protein, at 1593045 to 1593501 9029 mRNA_662: 9030 - HMMPfam-EF-hand domain pair-PF13499,ProSitePatterns-EF-hand calcium-binding domain.-PS00018,ProSiteProfiles-EF-hand calcium-binding domain profile.-PS50222,SUPERFAMILY--SSF47473, at 1593854 to 1595354 9030

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,592,070 + 9028 mRNA_660 0.90 1.4
1,592,091 - 0.3
1,592,497 + -0.6
1,592,506 - 0.7
1,592,518 - -0.6
1,592,525 + 0.2
1,592,689 - -0.3
1,592,696 + 1.2
1,592,837 - -0.3
1,592,842 + 0.9
1,593,262 - 9029 mRNA_661 0.47 0.2
1,593,436 - 9029 mRNA_661 0.86 -0.5
1,593,556 - -0.7
1,593,847 + 0.0
1,594,010 + 9030 mRNA_662 0.10 -0.1
1,594,119 - 9030 mRNA_662 0.18 1.8
1,594,204 - 9030 mRNA_662 0.23 0.0