Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_653

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_652: 9020 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 1570188 to 1571223 9020 mRNA_653: 9021 - HMMPfam-RTA1 like protein-PF04479, at 1571518 to 1572791 9021 mRNA_654: 9022 - K14809 DDX55, SPB4 ATP-dependent RNA helicase DDX55/SPB4, at 1573300 to 1575930 9022

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,570,888 - 9020 mRNA_652 0.68 0.1
1,570,893 - 9020 mRNA_652 0.68 1.2
1,571,176 + -1.2
1,571,500 + -0.1
1,571,757 + 9021 mRNA_653 0.19 0.7
1,571,926 - 9021 mRNA_653 0.32 -0.1
1,572,638 - 9021 mRNA_653 0.88 0.0
1,572,658 - 9021 mRNA_653 0.89 0.7
1,572,666 + 1.1
1,572,806 + 2.0
1,572,825 + 1.5
1,572,932 + 0.3
1,572,944 + 1.5
1,572,945 + 0.6
1,572,948 - -0.2
1,572,952 - 0.3
1,572,953 + -0.1
1,572,964 + 1.2
1,572,986 - -0.2
1,573,241 + -0.5
1,573,243 - -0.9
1,573,269 + 1.7
1,573,271 - -0.1
1,573,276 + -0.4