Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_643

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_642: 9010 - HMMPfam-Basic region leucine zipper-PF07716,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 1544667 to 1546033 9010 mRNA_643: 9011 - K15117 SLC25A34_35, OAC1 solute carrier family 25, member 34/35, at 1546203 to 1548129 9011 mRNA_644: 9012 - KOG3020 TatD-related DNase, at 1548576 to 1549928 9012

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,545,922 + -1.8
1,545,936 - -1.8
1,545,939 - -0.4
1,546,069 - 1.6
1,546,091 - 0.6
1,546,094 + 0.8
1,546,102 + -0.2
1,546,106 - -1.2
1,546,110 + 0.6
1,546,112 + 0.9
1,546,119 + -0.8
1,546,125 - 1.5
1,546,126 + 0.2
1,546,242 + 0.3
1,546,249 + -0.2
1,546,397 - 9011 mRNA_643 0.10 0.3
1,546,685 + 9011 mRNA_643 0.25 2.0
1,547,544 + 9011 mRNA_643 0.70 1.0
1,547,847 + 9011 mRNA_643 0.85 0.8
1,547,868 - 9011 mRNA_643 0.86 0.2
1,547,883 + 9011 mRNA_643 0.87 1.7
1,547,883 + 9011 mRNA_643 0.87 0.4
1,548,050 - -0.1
1,548,051 + 0.2
1,548,170 + 1.0
1,548,194 + 0.0
1,548,304 + 0.2
1,548,320 - -0.3
1,548,321 - -0.2
1,548,339 - -0.1
1,548,452 + -1.1
1,548,594 - -0.4
1,548,601 + -0.8
1,548,756 + 9012 mRNA_644 0.13 -0.0
1,548,758 - 9012 mRNA_644 0.13 -0.1
1,548,913 - 9012 mRNA_644 0.25 -1.2