Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_594

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_593: 8961 - K18469 TBC1D5 TBC1 domain family member 5, at 1422480 to 1425082 8961 mRNA_594: 8962 - K16261 YAT yeast amino acid transporter, at 1425721 to 1428613 8962 mRNA_595: 8963 - KOG0137 Very-long-chain acyl-CoA dehydrogenase, at 1429134 to 1431703 8963

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,424,829 - -1.2
1,424,829 - 1.2
1,424,917 + -0.3
1,424,968 - 0.0
1,424,975 - -0.7
1,425,000 - -0.8
1,425,050 - 0.5
1,425,062 - 1.4
1,425,065 + 1.7
1,425,066 - 1.0
1,425,077 - -0.5
1,425,093 - 1.5
1,425,102 + 0.3
1,425,106 - 1.5
1,425,122 - 0.1
1,425,124 - -0.9
1,425,124 + -0.0
1,425,125 + 0.7
1,425,138 - -0.9
1,425,140 - 0.7
1,425,155 - -0.1
1,425,162 + 0.1
1,425,177 - -0.7
1,425,177 - 0.5
1,425,177 - 0.1
1,425,178 + 0.0
1,425,179 + -0.0
1,425,179 + -0.8
1,425,181 + -0.0
1,425,195 - -0.3
1,425,202 - -0.2
1,425,232 - 2.6
1,425,239 + 0.6
1,425,249 - 1.4
1,425,268 - -0.7
1,425,268 - 0.7
1,425,277 + 1.5
1,425,280 + -0.9
1,425,290 - 0.4
1,425,290 - 1.4
1,425,294 - 0.0
1,425,295 - 0.7
1,425,303 - 0.2
1,425,308 + 0.5
1,425,313 - 1.4
1,425,318 - 0.0
1,425,320 - 2.2
1,425,322 - -0.6
1,425,323 + -0.5
1,425,323 + 2.0
1,425,327 + 0.8
1,425,350 + 1.5
1,425,395 - -1.5
1,425,408 - 0.6
1,425,435 + -0.3
1,425,457 - -0.7
1,425,462 + 1.0
1,425,576 + -0.3
1,425,588 - 0.6
1,425,592 + -1.2
1,425,601 + 0.3
1,425,607 - 1.2
1,425,611 - -0.3
1,425,611 + 0.7
1,425,612 - -0.3
1,425,613 + 0.0
1,425,629 - 0.7
1,425,629 - -0.3
1,425,629 - -0.5
1,425,635 + -0.3
1,425,635 - -0.6
1,425,638 + 1.5
1,425,646 + -0.5
1,425,647 + 0.1
1,425,649 + 0.1
1,425,652 - 1.2
1,425,653 + -0.5
1,425,660 + 1.6
1,425,668 + 3.1
1,425,670 - 1.2
1,425,671 + -0.1
1,425,672 - 0.1
1,425,697 + -0.6
1,425,775 - 1.3
1,425,777 - 1.8
1,425,795 - -0.4
1,425,806 + 1.4
1,425,822 - 0.0
1,425,957 + 1.7
1,425,958 - 0.6
1,425,958 - 2.6
1,425,959 + 0.0
1,425,963 - -0.7
1,426,404 - 8962 mRNA_594 0.24 0.3
1,426,417 - 8962 mRNA_594 0.24 -0.1
1,427,262 - 8962 mRNA_594 0.53 -0.3
1,427,442 + 8962 mRNA_594 0.59 0.1
1,427,846 - 8962 mRNA_594 0.73 1.2
1,428,151 - 8962 mRNA_594 0.84 0.3
1,428,287 - 8962 mRNA_594 0.89 0.5
1,428,446 - 1.9
1,428,758 + -1.5
1,428,847 + 0.0
1,428,864 - 0.1
1,428,887 + -0.7
1,428,895 + -0.3
1,428,919 + 0.3
1,428,926 + -2.1
1,428,935 - 0.0
1,428,936 + -0.6
1,428,940 - 1.6
1,428,940 - 0.2
1,428,954 - -1.1
1,428,956 + 0.3
1,428,957 + -0.2
1,428,969 + 1.1
1,428,972 - -0.1
1,429,007 - -0.0
1,429,097 + -2.5
1,429,101 - 0.2
1,429,235 + 0.6
1,429,394 + 8963 mRNA_595 0.10 0.2
1,429,524 - 8963 mRNA_595 0.15 1.0
1,429,539 - 8963 mRNA_595 0.16 -0.7
1,429,567 + 8963 mRNA_595 0.17 -1.6
1,429,602 + 8963 mRNA_595 0.18 0.3