Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_450

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_449: 8817 - HMMPfam-ESSS subunit of NADH-ubiquinone oxidoreductase (complex I)-PF10183, at 1047187 to 1047536 8817 mRNA_450: 8818 - K09525 DNAJC5 DnaJ homolog subfamily C member 5, at 1048153 to 1050379 8818 mRNA_451: 8819 - K00830 AGXT alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase, at 1050947 to 1052587 8819

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,047,284 - 8817 mRNA_449 0.28 0.0
1,047,988 - 1.1
1,047,995 + -0.5
1,048,012 + 0.5
1,048,018 + 2.3
1,048,037 + -0.7
1,048,039 + -0.0
1,048,042 - -1.0
1,048,049 + 1.5
1,048,194 - 0.1
1,048,585 - 8818 mRNA_450 0.19 0.0
1,048,619 + 8818 mRNA_450 0.21 1.6
1,048,892 + 8818 mRNA_450 0.33 0.8
1,048,991 - 8818 mRNA_450 0.38 0.2
1,049,013 - 8818 mRNA_450 0.39 0.3
1,049,049 + 8818 mRNA_450 0.40 1.3
1,049,383 - 8818 mRNA_450 0.55 -0.7
1,050,135 - 8818 mRNA_450 0.89 -0.4
1,050,320 - -0.5
1,050,468 - 0.7
1,050,777 - 1.8
1,050,801 - -0.6
1,050,804 + 0.1
1,050,813 + -1.3
1,050,817 + -0.6
1,050,819 - 1.2
1,050,828 + 0.3
1,050,835 - -0.3
1,050,944 + 1.8
1,050,952 - -0.7
1,050,983 + 0.6
1,051,126 - 8819 mRNA_451 0.11 -0.8
1,051,158 - 8819 mRNA_451 0.13 1.7