Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_418

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_418: 8786 - KOG2308 Phosphatidic acid-preferring phospholipase A1, contains DDHD domain, at 976232 to 979073 8786 mRNA_419: 8787 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 979163 to 981247 8787

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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975,325 + -0.0
975,337 - -0.6
975,466 + 0.9
975,624 - -1.2
975,886 - -1.1
975,907 - 0.3
975,908 - 1.1
975,909 - -0.9
975,911 + 2.3
975,915 + 0.1
975,941 + -0.0
976,045 - -0.5
976,062 - 0.0
976,070 + 1.1
976,190 - -0.4
976,190 + 0.1
976,338 + -0.1
976,342 + -0.4
976,342 - 1.8
976,343 - 0.0
976,347 - -0.1
976,483 - -0.1
976,796 + 8786 mRNA_418 0.20 0.3
976,841 - 8786 mRNA_418 0.21 -0.3
976,933 + 8786 mRNA_418 0.25 -0.5
977,083 + 8786 mRNA_418 0.30 -0.2
977,492 - 8786 mRNA_418 0.44 1.3
977,519 - 8786 mRNA_418 0.45 0.3
977,569 - 8786 mRNA_418 0.47 -0.8
978,108 + 8786 mRNA_418 0.66 -1.1
978,189 + 8786 mRNA_418 0.69 0.5
978,226 + 8786 mRNA_418 0.70 0.2
978,300 - 8786 mRNA_418 0.73 0.2
978,782 - 8786 mRNA_418 0.90 -2.3
979,436 + 8787 mRNA_419 0.13 0.8
979,436 + 8787 mRNA_419 0.13 -0.4
979,674 + 8787 mRNA_419 0.25 -0.1
979,717 - 8787 mRNA_419 0.27 0.6
979,853 + 8787 mRNA_419 0.33 0.2
980,002 + 8787 mRNA_419 0.40 1.5