Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_400

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_399: 8767 - K06874 K06874 zinc finger protein, at 928294 to 930157 8767 mRNA_400: 8768 - K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase, at 930496 to 933710 8768 mRNA_401: 8769 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 934317 to 936010 8769

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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930,429 + 0.6
930,568 - -0.6
930,689 - 0.0
930,711 + 0.2
930,727 + 2.2
930,882 - 8768 mRNA_400 0.12 0.2
931,004 + 8768 mRNA_400 0.16 0.1
931,143 + 8768 mRNA_400 0.20 0.1
931,149 + 8768 mRNA_400 0.20 0.0
931,439 - 8768 mRNA_400 0.29 -0.6
931,766 + 8768 mRNA_400 0.40 0.7
931,904 + 8768 mRNA_400 0.44 -1.2
932,131 - 8768 mRNA_400 0.51 -1.6
932,323 - 8768 mRNA_400 0.57 1.1
932,585 - 8768 mRNA_400 0.65 0.2
933,604 - -1.9
933,650 - 1.4
934,046 - 0.1
934,195 + -1.1
934,239 - -1.5
934,255 + 0.2
934,364 - 1.1
934,374 + -0.5
934,380 - -0.1
934,384 + 0.7
934,502 - 8769 mRNA_401 0.11 -0.5
934,530 + 8769 mRNA_401 0.13 0.8
934,539 - 8769 mRNA_401 0.13 -1.2
934,545 - 8769 mRNA_401 0.13 1.0