Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_311

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_311: 8679 - KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily, at 737521 to 741046 8679 mRNA_312: 8680 - K20103 DDX60 ATP-dependent RNA helicase DDX60, at 741330 to 747566 8680

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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736,621 + 0.8
736,621 - 0.2
736,662 - -0.0
736,747 + 1.7
736,766 + 0.4
736,936 - -0.7
736,988 + 2.1
737,567 - -0.6
737,986 - 8679 mRNA_311 0.13 -0.6
738,594 + 8679 mRNA_311 0.30 -0.0
738,727 - 8679 mRNA_311 0.34 0.0
738,775 - 8679 mRNA_311 0.36 -0.3
738,776 + 8679 mRNA_311 0.36 1.0
739,001 + 8679 mRNA_311 0.42 -0.3
739,316 - 8679 mRNA_311 0.51 -0.7
739,343 - 8679 mRNA_311 0.52 1.1
739,346 + 8679 mRNA_311 0.52 -0.2
739,478 - 8679 mRNA_311 0.56 1.1
739,615 + 8679 mRNA_311 0.59 0.1
739,808 + 8679 mRNA_311 0.65 1.3
740,055 + 8679 mRNA_311 0.72 -0.1
740,190 + 8679 mRNA_311 0.76 0.1
740,440 - 8679 mRNA_311 0.83 0.1
740,467 - 8679 mRNA_311 0.84 0.2
740,595 - 8679 mRNA_311 0.87 -1.2
740,926 - 0.9
740,930 - -0.0
741,064 - 1.3
741,064 - -0.4
741,066 - 0.3
741,067 - -0.2
741,068 - 1.0
741,085 + -0.9
741,325 - 0.1
741,330 - 2.1
741,331 - 1.5
741,342 + -0.1
741,350 - 0.3
741,350 - 0.7
741,352 - 1.1
741,357 + -0.4
741,359 - -0.2
741,361 + 0.7
741,366 + -0.7