Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_288

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_287: 8655 - KOG1861 Leucine permease transcriptional regulator, at 681999 to 683854 8655 mRNA_288: 8656 - K00521 E1.16.1.7 ferric-chelate reductase, at 684049 to 686611 8656 mRNA_289: 8657 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 686748 to 688788 8657

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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683,815 - -0.9
683,823 - -2.0
684,270 - 0.3
684,395 - 8656 mRNA_288 0.13 0.1
684,551 - 8656 mRNA_288 0.20 0.2
684,705 - 8656 mRNA_288 0.26 0.6
684,877 + 8656 mRNA_288 0.32 -1.2
684,983 + 8656 mRNA_288 0.36 -0.3
685,561 - 8656 mRNA_288 0.59 -1.3
685,562 + 8656 mRNA_288 0.59 -1.2
685,657 + 8656 mRNA_288 0.63 0.7
685,993 - 8656 mRNA_288 0.76 0.9
686,314 + 8656 mRNA_288 0.88 -1.3
686,419 + -0.0
686,439 - 2.2
686,574 - -0.8
686,581 - 0.0
686,587 + 1.3
686,606 + 0.1
686,607 - -1.0
686,740 - -0.7
686,742 + -1.4
686,743 - 0.6
686,751 - -1.2
686,884 + -0.5
686,893 - -1.3
687,066 - 8657 mRNA_289 0.16 0.9
687,197 + 8657 mRNA_289 0.22 0.5