Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_273

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_272: 8640 - KOG4178 Soluble epoxide hydrolase, at 654316 to 655397 8640 mRNA_273: 8641 - K15174 PAF1 RNA polymerase II-associated factor 1, at 655778 to 657591 8641 mRNA_274: 8642 - BLAST Putative Pc16g06240 protein [Torrubiella hemipterigena], at 657663 to 658330 8642

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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654,863 - 8640 mRNA_272 0.51 -1.6
655,441 - -1.3
655,580 + 0.6
655,583 + 2.3
655,586 - -1.3
655,597 - 1.0
655,603 + 0.1
655,603 + 0.0
655,603 + 2.3
655,605 + -0.1
655,607 + -0.1
655,609 - -0.2
655,610 + 1.1
655,612 + -0.1
655,623 + 1.5
655,725 - 0.6
655,762 + 1.9
655,768 + 0.0
655,768 + -0.0
656,313 + 8641 mRNA_273 0.29 0.5
656,471 - 8641 mRNA_273 0.38 0.8
656,615 - 8641 mRNA_273 0.46 2.3
656,874 - 8641 mRNA_273 0.60 1.7
657,472 - -1.5
657,622 - -0.8
657,648 + -0.0
657,673 + -0.4
657,843 + 8642 mRNA_274 0.27 -0.3
658,248 + 8642 mRNA_274 0.88 0.8
658,399 - 0.9
658,430 + -0.0
658,524 - 0.3