Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_269

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_268: 8636 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 642489 to 643919 8636 mRNA_269: 8637 - BLAST nitrogen assimilation transcription factor [Rhodo..., at 644049 to 645349 8637 mRNA_270: 8638 - BLAST protein of unknown function [Taphrina deformans PYCC ..., at 645622 to 646120 8638

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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643,064 + 8636 mRNA_268 0.40 1.3
643,463 - 8636 mRNA_268 0.68 -0.9
643,550 - 8636 mRNA_268 0.74 0.0
643,627 + 8636 mRNA_268 0.80 -0.6
643,687 - 8636 mRNA_268 0.84 -0.1
643,854 + 1.2
643,862 + 1.6
644,252 + 8637 mRNA_269 0.16 -0.3
644,404 - 8637 mRNA_269 0.27 0.6
644,465 - 8637 mRNA_269 0.32 -0.5
644,485 - 8637 mRNA_269 0.34 0.7
644,714 - 8637 mRNA_269 0.51 1.0
644,871 + 8637 mRNA_269 0.63 -0.1
645,072 - 8637 mRNA_269 0.79 1.9
646,239 + 3.2
646,245 + -0.2
646,253 + -0.5
646,255 + -0.1
646,272 - 1.2
646,275 + 1.4