Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_213

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_212: 8580 - K01194 TREH, treA, treF alpha,alpha-trehalase, at 521112 to 523919 8580 mRNA_213: 8581 - KOG1362 Choline transporter-like protein, at 524056 to 525912 8581

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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523,266 - 8580 mRNA_212 0.77 -0.7
523,296 - 8580 mRNA_212 0.78 0.9
523,386 - 8580 mRNA_212 0.81 1.2
523,414 - 8580 mRNA_212 0.82 -0.7
523,425 - 8580 mRNA_212 0.82 1.5
523,425 + 8580 mRNA_212 0.82 -0.5
523,431 + 8580 mRNA_212 0.83 0.5
523,431 + 8580 mRNA_212 0.83 -0.1
523,469 + 8580 mRNA_212 0.84 2.1
523,484 + 8580 mRNA_212 0.84 0.1
523,527 + 8580 mRNA_212 0.86 0.4
523,531 - 8580 mRNA_212 0.86 -0.2
523,539 + 8580 mRNA_212 0.86 -0.9
523,551 - 8580 mRNA_212 0.87 0.4
523,554 + 8580 mRNA_212 0.87 -0.8
523,562 + 8580 mRNA_212 0.87 0.1
523,568 + 8580 mRNA_212 0.87 1.0
523,658 - -0.3
523,659 + 0.3
523,673 + 0.7
523,683 + -0.0
523,707 - 0.1
523,713 + -1.2
523,885 + 0.9
523,887 - 1.0
523,962 - -0.4
523,972 + 1.0
523,973 - 0.2
523,986 - -0.4
524,008 - -0.0
524,024 - -0.6
524,358 + 8581 mRNA_213 0.16 -0.3
524,838 - 8581 mRNA_213 0.42 1.9
524,848 + 8581 mRNA_213 0.43 -0.5
524,986 - 8581 mRNA_213 0.50 0.2
525,470 - 8581 mRNA_213 0.76 -0.6
525,475 + 8581 mRNA_213 0.76 -0.8
525,795 + 0.9
526,207 + -0.7
526,371 + -0.6
526,497 - -0.2
526,781 - -0.4
526,786 + -0.5
526,787 + -0.7
526,820 + 0.6