Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_201

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_200: 8568 - K15541 MPE1 protein MPE1, at 489424 to 492149 8568 mRNA_201: 8569 - K00294 E1.2.1.88 1-pyrroline-5-carboxylate dehydrogenase, at 492772 to 495021 8569 mRNA_202: 8570 - HMMPfam-Frequency clock protein-PF09421, at 495941 to 499437 8570

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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492,370 - 1.9
492,372 + -0.2
492,377 - 0.3
492,504 - -1.5
492,515 - -0.2
492,521 + 0.1
492,522 - -0.1
492,526 + 1.6
492,527 + 0.6
492,535 + -0.3
492,536 - 3.3
492,552 - 1.8
492,553 - -0.4
492,682 + 0.3
492,813 - 0.3
492,822 + 1.1
492,832 + -0.1
493,255 + 8569 mRNA_201 0.21 0.5
493,260 - 8569 mRNA_201 0.22 1.3
493,382 - 8569 mRNA_201 0.27 1.9
493,392 + 8569 mRNA_201 0.28 1.0
493,674 + 8569 mRNA_201 0.40 0.1
493,677 + 8569 mRNA_201 0.40 2.5
493,688 - 8569 mRNA_201 0.41 -0.0
493,696 + 8569 mRNA_201 0.41 -0.5
494,868 - -0.3
495,030 + -0.3
495,125 - -0.7
495,147 - -0.7
495,152 + -0.6
495,155 + 1.2
495,155 - -0.6
495,157 - 0.8
495,159 - -0.5
495,162 + -0.3
495,162 + -0.4
495,168 - 0.5
495,169 - 1.9
495,177 - 1.4
495,179 + 2.3
495,180 - -0.7
495,181 + 0.9
495,181 + 1.1
495,182 + -0.1
495,182 + 1.9
495,183 + 1.2
495,186 - -0.4
495,189 + 0.3
495,192 + 0.9
495,201 - 0.7
495,209 + -0.2
495,247 + 1.2
495,495 - 0.5
495,505 - -0.9