Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_179

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_178: 8546 - K00974 cca tRNA nucleotidyltransferase (CCA-adding enzyme), at 435163 to 437748 8546 mRNA_179: 8547 - KOG2886 Uncharacterized conserved protein, at 437893 to 438740 8547 mRNA_180: 8548 - K01647 CS, gltA citrate synthase, at 438943 to 441127 8548

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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437,946 - -0.1
437,994 - 8547 mRNA_179 0.12 -1.0
437,995 + 8547 mRNA_179 0.12 0.9
438,286 + 8547 mRNA_179 0.46 0.4
438,294 - 8547 mRNA_179 0.47 -0.9
438,468 - 8547 mRNA_179 0.68 0.5
438,697 + 1.1
438,710 - 0.8
438,711 + 0.4
438,717 - 0.1
438,727 - 1.3
438,734 + 1.6
438,736 - -0.1
438,741 - -0.2
438,751 - 0.2
438,766 - -0.1
438,768 - -1.3
438,862 - 0.3
438,864 - 1.9
438,866 - 0.9
438,890 - 0.0
438,998 + 0.2
439,019 - -1.2
439,019 - 1.9
439,024 - 0.3
439,030 - -1.2
439,048 - -0.9
439,050 + -0.5
439,186 - 8548 mRNA_180 0.11 -1.1
439,206 + 8548 mRNA_180 0.12 -0.0
439,230 + 8548 mRNA_180 0.13 0.3
439,250 + 8548 mRNA_180 0.14 -1.3
439,332 + 8548 mRNA_180 0.18 0.4
439,336 + 8548 mRNA_180 0.18 -0.4
439,503 + 8548 mRNA_180 0.26 0.3
439,598 + 8548 mRNA_180 0.30 -0.8
439,642 - 8548 mRNA_180 0.32 -0.6
439,652 - 8548 mRNA_180 0.32 1.0