Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_141

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_140: 8508 - K14571 RIX7, NVL ribosome biogenesis ATPase, at 336645 to 339470 8508 mRNA_141: 8509 - Hypothetical Protein, at 339978 to 342089 8509 mRNA_142: 8510 - HMMPfam-Protein of unknown function (DUF3712)-PF12505, at 343005 to 355699 8510

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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339,578 - 0.6
339,595 - -2.4
339,597 + -0.2
339,606 - 1.7
339,614 - 0.7
339,617 + 0.6
339,617 + -0.3
339,729 + -0.2
339,744 + -0.8
339,767 - -1.3
339,779 - 0.1
339,782 + 0.8
339,786 - 0.0
339,789 - -0.4
339,798 - 0.8
339,798 - -2.1
339,802 - 0.8
339,803 + 0.5
339,804 - 0.6
339,811 + 1.3
339,837 + 0.1
339,837 + 1.2
339,837 - -0.3
339,841 + 1.6
339,844 + 0.9
339,844 + 0.1
339,846 - -0.1
339,851 - 0.2
339,851 + -0.1
339,852 - -1.2
339,861 + 0.3
339,864 + 1.9
339,865 - 0.6
339,885 - -1.4
339,892 + 0.5
339,897 - 0.3
339,900 + -0.6
339,907 + -1.3
339,911 + 0.1
339,913 + 0.3
339,925 - 2.5
340,037 + 0.6
340,081 - -0.0
340,224 - 8509 mRNA_141 0.12 2.0
340,239 + 8509 mRNA_141 0.12 -0.2
341,286 + 8509 mRNA_141 0.62 0.7
341,520 - 8509 mRNA_141 0.73 2.5
341,679 - 8509 mRNA_141 0.81 0.2
341,809 - 8509 mRNA_141 0.87 1.1
341,977 - -0.3
342,072 + 0.0
342,127 + 0.3
342,129 + 0.4
342,131 - -0.1
342,144 + -0.5
342,149 - 0.5
342,167 + 0.2
342,171 - -0.1
342,177 + 0.3
342,187 - -0.6
342,220 - -0.6
342,230 - 0.0
342,230 - 0.6
342,248 - 1.2
342,249 + 0.9
342,250 - -0.5
342,250 + 0.5
342,274 + -0.8
342,293 - 0.8
342,309 - 1.5
342,313 + 0.6
342,317 - -0.1
342,326 - -1.3
342,328 - 0.9
342,328 - 1.0
342,330 - -0.4
342,337 - 0.2
342,342 + -0.0
342,344 + -0.6
342,344 + -0.6
342,353 + 0.2
342,476 + 0.7
342,477 + 1.9
342,487 + 0.1
342,488 - 1.3
342,491 - -0.7
342,493 - -0.7
342,550 - 0.4
342,591 - -0.2
342,611 - 2.1
342,619 - 2.6
342,620 + 0.4
342,626 + 0.2
342,639 - -0.2
342,652 + -0.5
342,742 - -0.1
342,750 - -0.8
342,759 - 1.2
342,761 + -1.3
342,762 + -0.4
342,791 - -1.2
342,793 + 0.1
342,808 - -0.0
342,811 + -0.4
342,884 - -0.7
342,951 + -1.1
342,996 - -1.3