Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_111

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_110: 8478 - KOG3399 Predicted Yippee-type zinc-binding protein, at 260137 to 260817 8478 mRNA_111: 8479 - KOG0254 Predicted transporter (major facilitator superfamily), at 260930 to 263760 8479 mRNA_112: 8480 - K10899 RECQL ATP-dependent DNA helicase Q1, at 264157 to 266973 8480

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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259,955 + -0.1
259,992 - 0.2
260,130 + 1.7
260,258 + 8478 mRNA_110 0.18 0.1
260,272 - 8478 mRNA_110 0.20 -2.4
260,309 + 8478 mRNA_110 0.25 -0.2
260,420 + 8478 mRNA_110 0.42 -0.2
260,424 + 8478 mRNA_110 0.42 1.6
260,436 - 8478 mRNA_110 0.44 -0.3
260,752 + -0.1
260,890 - 0.9
260,921 + 0.3
260,990 + -0.0
261,103 - -0.7
261,144 + 0.2
261,150 - 0.8
261,760 + 8479 mRNA_111 0.29 0.3
261,855 - 8479 mRNA_111 0.33 2.2
262,051 - 8479 mRNA_111 0.40 0.8
262,228 - 8479 mRNA_111 0.46 -0.0
262,522 - 8479 mRNA_111 0.56 0.7
263,436 + 8479 mRNA_111 0.89 0.0
263,490 + -0.7
263,492 + -0.2
263,503 + 0.8
263,503 + 1.0
263,504 + 0.1
263,507 + 0.6
263,517 - -0.6
263,519 - -0.6
263,539 + 0.6
263,613 + -0.9
263,625 - 0.4
263,641 - 1.6
263,663 + 0.3
263,672 + -0.1
263,683 + 1.4
263,786 + 0.3
263,798 - -0.2
263,822 + -0.5
263,859 + -0.4
263,865 + 0.4
263,875 + 0.3
263,924 - 1.2
264,050 + 0.1
264,089 - 0.2
264,418 + 1.5
264,544 + 8480 mRNA_112 0.14 0.1
264,554 + 8480 mRNA_112 0.14 0.7
264,567 + 8480 mRNA_112 0.15 -0.4